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| | QcMLFile () |
| | Default constructor. More...
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| | ~QcMLFile () |
| | Destructor. More...
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| String | map2csv (const std::map< String, std::map< String, String > > &cvs_table, const String &separator) const |
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| String | exportIDstats (const String &filename) const |
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| void | registerRun (const String id, const String name) |
| | Registers a run in the qcml file with the respective mappings. More...
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| void | registerSet (const String id, const String name, const std::set< String > &names) |
| | Registers a set in the qcml file with the respective mappings. More...
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| void | addRunQualityParameter (String r, QualityParameter qp) |
| | Just adds a qualityparameter to run by the name r. More...
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| void | addRunAttachment (String r, Attachment at) |
| | Just adds a attachment to run by the name r. More...
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| void | addSetQualityParameter (String r, QualityParameter qp) |
| | Just adds a qualityparameter to set by the name r. More...
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| void | addSetAttachment (String r, Attachment at) |
| | Just adds a attachment to set by the name r. More...
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| void | removeAttachment (String r, std::vector< String > &ids, String at="") |
| | Removes attachments referencing a id given in ids, from run/set r. All attachments if no attachment name is given with at. More...
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| void | removeAttachment (String r, String at) |
| | Removes attachment with cv accession at from run/set r. More...
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| void | removeAllAttachments (String at) |
| | Removes attachment with cv accession at from all runs/sets. More...
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| void | removeQualityParameter (String r, std::vector< String > &ids) |
| | Just removes qualityparameter going by one of the ID attributes given in ids. More...
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| void | merge (const QcMLFile &addendum, String setname="") |
| | merges the given QCFile into this one More...
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| void | collectSetParameter (const String setname, const String qp, std::vector< String > &ret) |
| | collects the values of given QPs (as CVid) of the given set More...
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| String | exportAttachment (const String filename, const String qpname) const |
| | Returns a String of a tab separated rows if found empty string else from run/set by the name filename of the qualityparameter by the name qpname. More...
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| String | exportQP (const String filename, const String qpname) const |
| | Returns a String value in qutation of a qualityparameter by the name qpname in run/set by the name filename. More...
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| String | exportQPs (const String filename, const StringList qpnames) const |
| | Returns a String of a tab separated qualityparameter by the name qpname in run/set by the name filename. More...
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| void | getRunIDs (std::vector< String > &ids) const |
| | Gives the ids of the registered runs in the vector ids. More...
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| void | getRunNames (std::vector< String > &ids) const |
| | Gives the names of the registered runs in the vector ids. More...
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| bool | existsRun (const String filename, bool checkname=false) const |
| | Returns true if the given run id is present in this file, if checkname is true it also checks the names. More...
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| bool | existsSet (const String filename, bool checkname=false) const |
| | Returns true if the given set id is present in this file, if checkname is true it also checks the names. More...
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| void | existsRunQualityParameter (const String filename, const String qpname, std::vector< String > &ids) const |
| | Returns the ids of the parameter name given if found in given run empty else. More...
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| void | existsSetQualityParameter (const String filename, const String qpname, std::vector< String > &ids) const |
| | Returns the ids of the parameter name given if found in given set, empty else. More...
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| void | store (const String &filename) const |
| | Store the QCFile. More...
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| void | load (const String &filename) |
| | Load a QCFile. More...
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Public Member Functions inherited from XMLHandler |
| | XMLHandler (const String &filename, const String &version) |
| | Default constructor. More...
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| virtual | ~XMLHandler () |
| | Destructor. More...
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| void | reset () |
| | Release internal memory used for parsing (call. More...
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| void | fatalError (ActionMode mode, const String &msg, UInt line=0, UInt column=0) const |
| | Fatal error handler. Throws a ParseError exception. More...
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| void | error (ActionMode mode, const String &msg, UInt line=0, UInt column=0) const |
| | Error handler for recoverable errors. More...
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| void | warning (ActionMode mode, const String &msg, UInt line=0, UInt column=0) const |
| | Warning handler. More...
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| virtual void | writeTo (std::ostream &) |
| | Writes the contents to a stream. More...
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| String | errorString () |
| | Returns the last error description. More...
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| void | fatalError (const xercesc::SAXParseException &exception) |
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| void | error (const xercesc::SAXParseException &exception) |
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| void | warning (const xercesc::SAXParseException &exception) |
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| | XMLFile () |
| | Default constructor. More...
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| | XMLFile (const String &schema_location, const String &version) |
| | Constructor that sets the schema location. More...
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| virtual | ~XMLFile () |
| | Destructor. More...
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| bool | isValid (const String &filename, std::ostream &os=std::cerr) |
| | Checks if a file validates against the XML schema. More...
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| const String & | getVersion () const |
| | return the version of the schema More...
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| | ProgressLogger () |
| | Constructor. More...
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| | ~ProgressLogger () |
| | Destructor. More...
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| void | setLogType (LogType type) const |
| | Sets the progress log that should be used. The default type is NONE! More...
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| LogType | getLogType () const |
| | Returns the type of progress log being used. More...
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| void | startProgress (SignedSize begin, SignedSize end, const String &label) const |
| | Initializes the progress display. More...
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| void | setProgress (SignedSize value) const |
| | Sets the current progress. More...
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| void | endProgress () const |
| | Ends the progress display. More...
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| virtual void | endElement (const XMLCh *const , const XMLCh *const , const XMLCh *const qname) |
| | Parsing method for closing tags. More...
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| virtual void | startElement (const XMLCh *const , const XMLCh *const , const XMLCh *const qname, const xercesc::Attributes &attributes) |
| | Parsing method for opening tags. More...
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| virtual void | characters (const XMLCh *const chars, const XMLSize_t length) |
| | Parsing method for character data. More...
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Protected Member Functions inherited from XMLHandler |
| bool | equal_ (const XMLCh *a, const XMLCh *b) |
| | Returns if two xerces strings are equal. More...
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| void | writeUserParam_ (const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) const |
| | Writes the content of MetaInfoInterface to the file. More...
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| Int | asInt_ (const String &in) |
| | Conversion of a String to an integer value. More...
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| Int | asInt_ (const XMLCh *in) |
| | Conversion of a Xerces string to an integer value. More...
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| UInt | asUInt_ (const String &in) |
| | Conversion of a String to an unsigned integer value. More...
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| double | asDouble_ (const String &in) |
| | Conversion of a String to a double value. More...
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| float | asFloat_ (const String &in) |
| | Conversion of a String to a float value. More...
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| bool | asBool_ (const String &in) |
| | Conversion of a string to a boolean value. More...
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| DateTime | asDateTime_ (String date_string) |
| | Conversion of a xs:datetime string to a DataTime value. More...
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| char * | attributeAsString_ (const xercesc::Attributes &a, const char *name) const |
| | Converts an attribute to a String. More...
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| Int | attributeAsInt_ (const xercesc::Attributes &a, const char *name) const |
| | Converts an attribute to a Int. More...
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| DoubleReal | attributeAsDouble_ (const xercesc::Attributes &a, const char *name) const |
| | Converts an attribute to a DoubleReal. More...
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| DoubleList | attributeAsDoubleList_ (const xercesc::Attributes &a, const char *name) const |
| | Converts an attribute to a DoubleList. More...
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| IntList | attributeAsIntList_ (const xercesc::Attributes &a, const char *name) const |
| | Converts an attribute to an IntList. More...
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| StringList | attributeAsStringList_ (const xercesc::Attributes &a, const char *name) const |
| | Converts an attribute to an StringList. More...
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| bool | optionalAttributeAsString_ (String &value, const xercesc::Attributes &a, const char *name) const |
| | Assigns the attribute content to the String value if the attribute is present. More...
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| bool | optionalAttributeAsInt_ (Int &value, const xercesc::Attributes &a, const char *name) const |
| | Assigns the attribute content to the Int value if the attribute is present. More...
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| bool | optionalAttributeAsUInt_ (UInt &value, const xercesc::Attributes &a, const char *name) const |
| | Assigns the attribute content to the UInt value if the attribute is present. More...
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| bool | optionalAttributeAsDouble_ (DoubleReal &value, const xercesc::Attributes &a, const char *name) const |
| | Assigns the attribute content to the DoubleReal value if the attribute is present. More...
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| bool | optionalAttributeAsDoubleList_ (DoubleList &value, const xercesc::Attributes &a, const char *name) const |
| | Assigns the attribute content to the DoubleList value if the attribute is present. More...
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| bool | optionalAttributeAsStringList_ (StringList &value, const xercesc::Attributes &a, const char *name) const |
| | Assigns the attribute content to the StringList value if the attribute is present. More...
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| bool | optionalAttributeAsIntList_ (IntList &value, const xercesc::Attributes &a, const char *name) const |
| | Assigns the attribute content to the IntList value if the attribute is present. More...
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| char * | attributeAsString_ (const xercesc::Attributes &a, const XMLCh *name) const |
| | Converts an attribute to a String. More...
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| Int | attributeAsInt_ (const xercesc::Attributes &a, const XMLCh *name) const |
| | Converts an attribute to a Int. More...
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| DoubleReal | attributeAsDouble_ (const xercesc::Attributes &a, const XMLCh *name) const |
| | Converts an attribute to a DoubleReal. More...
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| DoubleList | attributeAsDoubleList_ (const xercesc::Attributes &a, const XMLCh *name) const |
| | Converts an attribute to a DoubleList. More...
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| IntList | attributeAsIntList_ (const xercesc::Attributes &a, const XMLCh *name) const |
| | Converts an attribute to a IntList. More...
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| StringList | attributeAsStringList_ (const xercesc::Attributes &a, const XMLCh *name) const |
| | Converts an attribute to a StringList. More...
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| bool | optionalAttributeAsString_ (String &value, const xercesc::Attributes &a, const XMLCh *name) const |
| | Assigns the attribute content to the String value if the attribute is present. More...
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| bool | optionalAttributeAsInt_ (Int &value, const xercesc::Attributes &a, const XMLCh *name) const |
| | Assigns the attribute content to the Int value if the attribute is present. More...
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| bool | optionalAttributeAsUInt_ (UInt &value, const xercesc::Attributes &a, const XMLCh *name) const |
| | Assigns the attribute content to the UInt value if the attribute is present. More...
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| bool | optionalAttributeAsDouble_ (DoubleReal &value, const xercesc::Attributes &a, const XMLCh *name) const |
| | Assigns the attribute content to the DoubleReal value if the attribute is present. More...
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| bool | optionalAttributeAsDoubleList_ (DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) const |
| | Assigns the attribute content to the DoubleList value if the attribute is present. More...
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| bool | optionalAttributeAsIntList_ (IntList &value, const xercesc::Attributes &a, const XMLCh *name) const |
| | Assigns the attribute content to the IntList value if the attribute is present. More...
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| bool | optionalAttributeAsStringList_ (StringList &value, const xercesc::Attributes &a, const XMLCh *name) const |
| | Assigns the attribute content to the StringList value if the attribute is present. More...
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| SignedSize | cvStringToEnum_ (const Size section, const String &term, const char *message, const SignedSize result_on_error=0) |
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| void | parse_ (const String &filename, XMLHandler *handler) |
| | Parses the XML file given by filename using the handler given by handler. More...
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| void | save_ (const String &filename, XMLHandler *handler) const |
| | Stores the contents of the XML handler given by handler in the file given by filename. More...
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| void | enforceEncoding_ (const String &encoding) |
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File adapter for QcML files.
This Class is supposed to internally collect the data for the qcML File