Util which can be used to evaluate pairs of MRM experiments
The command line parameters of this tool are:
MRMPairFinder -- Util which can be used to evaluate labeled pair ratios on MRM features.
Version: 1.11.1 Nov 14 2013, 11:18:15, Revision: 11976
Usage:
MRMPairFinder <options>
Options (mandatory options marked with '*'):
-in <file>* Input featureXML file containing the features of the MRM experiment spectra. (valid
formats: 'featureXML')
-pair_in <file>* Pair-file in the format: prec-m/z-light prec-m/z-heavy frag-m/z-light frag-m/z-heavy
rt (valid formats: 'csv')
-out <file>* Output consensusXML file were the pairs of the features will be written to. (valid
formats: 'consensusXML')
-feature_out <file> Output featureXML file, only written if given, skipped otherwise. (valid formats: 'fea
tureXML')
Common UTIL options:
-ini <file> Use the given TOPP INI file
-threads <n> Sets the number of threads allowed to be used by the TOPP tool (default: '1')
-write_ini <file> Writes the default configuration file
--help Shows options
--helphelp Shows all options (including advanced)
INI file documentation of this tool:
| OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:24 using doxygen 1.8.5 |