Meta information about digestion of a sample. More...
#include <OpenMS/METADATA/Digestion.h>
Public Member Functions | |
| Digestion () | |
| default constructor More... | |
| Digestion (const Digestion &) | |
| copy constructor More... | |
| virtual | ~Digestion () |
| destructor More... | |
| Digestion & | operator= (const Digestion &) |
| assignment operator More... | |
| virtual bool | operator== (const SampleTreatment &rhs) const |
| Equality operator. More... | |
| virtual SampleTreatment * | clone () const |
| clone method. See SampleTreatment More... | |
| const String & | getEnzyme () const |
| returns the enzyme name (default is "") More... | |
| void | setEnzyme (const String &enzyme) |
| sets the enzyme name More... | |
| DoubleReal | getDigestionTime () const |
| returns the digestion time in minutes (default is 0.0) More... | |
| void | setDigestionTime (DoubleReal digestion_time) |
| sets the digestion time in minutes More... | |
| DoubleReal | getTemperature () const |
| return the temperature during digestion in degree C (default is 0.0) More... | |
| void | setTemperature (DoubleReal temperature) |
| sets the temperature during digestion in degree C More... | |
| DoubleReal | getPh () const |
| returns the pH value (default is 0.0) More... | |
| void | setPh (DoubleReal ph) |
| sets the pH value More... | |
Public Member Functions inherited from SampleTreatment | |
| SampleTreatment (const String &type) | |
| Constructor. More... | |
| SampleTreatment (const SampleTreatment &) | |
| Copy constructor. More... | |
| virtual | ~SampleTreatment () |
| destructor More... | |
| SampleTreatment & | operator= (const SampleTreatment &) |
| Assignment operator. More... | |
| const String & | getType () const |
| return the treatment type More... | |
| const String & | getComment () const |
| returns the description of the sample treatment More... | |
| void | setComment (const String &comment) |
| sets the description of the sample treatment More... | |
Public Member Functions inherited from MetaInfoInterface | |
| MetaInfoInterface () | |
| constructor More... | |
| MetaInfoInterface (const MetaInfoInterface &rhs) | |
| copy constructor More... | |
| ~MetaInfoInterface () | |
| destructor More... | |
| MetaInfoInterface & | operator= (const MetaInfoInterface &rhs) |
| assignment operator More... | |
| bool | operator== (const MetaInfoInterface &rhs) const |
| Equality operator. More... | |
| bool | operator!= (const MetaInfoInterface &rhs) const |
| Equality operator. More... | |
| const DataValue & | getMetaValue (const String &name) const |
| returns the value corresponding to a string More... | |
| const DataValue & | getMetaValue (UInt index) const |
| returns the value corresponding to an index More... | |
| bool | metaValueExists (const String &name) const |
| returns if this MetaInfo is set More... | |
| bool | metaValueExists (UInt index) const |
| returns if this MetaInfo is set More... | |
| void | setMetaValue (const String &name, const DataValue &value) |
| sets the DataValue corresponding to a name More... | |
| void | setMetaValue (UInt index, const DataValue &value) |
| sets the DataValue corresponding to an index More... | |
| void | removeMetaValue (const String &name) |
Removes the DataValue corresponding to name if it exists. More... | |
| void | removeMetaValue (UInt index) |
Removes the DataValue corresponding to index if it exists. More... | |
| void | getKeys (std::vector< String > &keys) const |
| fills the given vector with a list of all keys for which a value is set More... | |
| void | getKeys (std::vector< UInt > &keys) const |
| fills the given vector with a list of all keys for which a value is set More... | |
| bool | isMetaEmpty () const |
| returns if the MetaInfo is empty More... | |
| void | clearMetaInfo () |
| removes all meta values More... | |
Protected Attributes | |
| String | enzyme_ |
| DoubleReal | digestion_time_ |
| DoubleReal | temperature_ |
| DoubleReal | ph_ |
Protected Attributes inherited from SampleTreatment | |
| String | type_ |
| String | comment_ |
Protected Attributes inherited from MetaInfoInterface | |
| MetaInfo * | meta_ |
| pointer to the MetaInfo object. 0 by default More... | |
Additional Inherited Members | |
Static Public Member Functions inherited from MetaInfoInterface | |
| static MetaInfoRegistry & | metaRegistry () |
| retuns a reference to the MetaInfoRegistry More... | |
Protected Member Functions inherited from MetaInfoInterface | |
| void | createIfNotExists_ () |
| creates the MetaInfo object if it does not exist More... | |
Meta information about digestion of a sample.
Representation of a digestion.
| Digestion | ( | ) |
default constructor
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virtual |
destructor
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virtual |
clone method. See SampleTreatment
Implements SampleTreatment.
| DoubleReal getDigestionTime | ( | ) | const |
returns the digestion time in minutes (default is 0.0)
| const String& getEnzyme | ( | ) | const |
returns the enzyme name (default is "")
| DoubleReal getPh | ( | ) | const |
returns the pH value (default is 0.0)
| DoubleReal getTemperature | ( | ) | const |
return the temperature during digestion in degree C (default is 0.0)
|
virtual |
Equality operator.
Although this operator takes a reference to a SampleTreatment as argument it tests for the equality of Tagging instances!
Reimplemented from SampleTreatment.
| void setDigestionTime | ( | DoubleReal | digestion_time | ) |
sets the digestion time in minutes
| void setEnzyme | ( | const String & | enzyme | ) |
sets the enzyme name
| void setPh | ( | DoubleReal | ph | ) |
sets the pH value
| void setTemperature | ( | DoubleReal | temperature | ) |
sets the temperature during digestion in degree C
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protected |
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protected |
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protected |
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protected |
| OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:32 using doxygen 1.8.5 |