Merge files according to experimental design. More...
#include <OpenMS/ANALYSIS/QUANTITATION/QuantitativeExperimentalDesign.h>
Public Member Functions | |
| QuantitativeExperimentalDesign () | |
| Default constructor. More... | |
| virtual | ~QuantitativeExperimentalDesign () |
| void | applyDesign2Resolver (ProteinResolver &resolver, TextFile &file, StringList &fileNames) |
| xxxxxxx More... | |
| void | applyDesign2Quantifier (PeptideAndProteinQuant &quantifier, TextFile &file, StringList &fileNames) |
| xxxxxxx More... | |
Public Member Functions inherited from DefaultParamHandler | |
| DefaultParamHandler (const String &name) | |
| Constructor with name that is displayed in error messages. More... | |
| DefaultParamHandler (const DefaultParamHandler &rhs) | |
| Copy constructor. More... | |
| virtual | ~DefaultParamHandler () |
| Destructor. More... | |
| virtual DefaultParamHandler & | operator= (const DefaultParamHandler &rhs) |
| Assignment operator. More... | |
| virtual bool | operator== (const DefaultParamHandler &rhs) const |
| Equality operator. More... | |
| void | setParameters (const Param ¶m) |
| Sets the parameters. More... | |
| const Param & | getParameters () const |
| Non-mutable access to the parameters. More... | |
| const Param & | getDefaults () const |
| Non-mutable access to the default parameters. More... | |
| const String & | getName () const |
| Non-mutable access to the name. More... | |
| void | setName (const String &name) |
| Mutable access to the name. More... | |
| const std::vector< String > & | getSubsections () const |
| Non-mutable access to the registered subsections. More... | |
Private Member Functions | |
| QuantitativeExperimentalDesign (const QuantitativeExperimentalDesign &) | |
| Not implemented. More... | |
| QuantitativeExperimentalDesign & | operator= (const QuantitativeExperimentalDesign &) |
| Not implemented. More... | |
| void | mergeFeatureMaps_ (FeatureMap<> &map, const String &experiment, StringList &file_paths) |
| void | mergeConsensusMaps_ (ConsensusMap &map, const String &experiment, StringList &file_paths) |
| void | mergeIDFiles_ (std::vector< ProteinIdentification > &proteins, std::vector< PeptideIdentification > &peptides, const String &experiment, StringList &file_paths) |
| void | findRelevantFilePaths_ (std::map< String, StringList > &design2FileBaseName, std::map< String, StringList > &design2FilePath, StringList &filePaths) |
| void | analyzeHeader_ (UInt &expCol, UInt &fileCol, StringList &header) |
| Analyze header, which column represents filename and experimental setting. More... | |
| void | getSeparator_ (String &separator) |
| Helper class to get separator of the experimental design text file. More... | |
| void | mapFiles2Design_ (std::map< String, StringList > &experiments, TextFile &file) |
| helper class. which file name belongs to which experimental setting More... | |
Additional Inherited Members | |
Protected Member Functions inherited from DefaultParamHandler | |
| virtual void | updateMembers_ () |
| This method is used to update extra member variables at the end of the setParameters() method. More... | |
| void | defaultsToParam_ () |
| Updates the parameters after the defaults have been set in the constructor. More... | |
Protected Attributes inherited from DefaultParamHandler | |
| Param | param_ |
| Container for current parameters. More... | |
| Param | defaults_ |
| Container for default parameters. This member should be filled in the constructor of derived classes! More... | |
| std::vector< String > | subsections_ |
| Container for registered subsections. This member should be filled in the constructor of derived classes! More... | |
| String | error_name_ |
| Name that is displayed in error messages during the parameter checking. More... | |
| bool | check_defaults_ |
| If this member is set to false no checking if parameters in done;. More... | |
| bool | warn_empty_defaults_ |
| If this member is set to false no warning is emitted when defaults are empty;. More... | |
Merge files according to experimental design.
This class
Default constructor.
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virtual |
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private |
Not implemented.
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private |
Analyze header, which column represents filename and experimental setting.
| void applyDesign2Quantifier | ( | PeptideAndProteinQuant & | quantifier, |
| TextFile & | file, | ||
| StringList & | fileNames | ||
| ) |
xxxxxxx
| void applyDesign2Resolver | ( | ProteinResolver & | resolver, |
| TextFile & | file, | ||
| StringList & | fileNames | ||
| ) |
xxxxxxx
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private |
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private |
Helper class to get separator of the experimental design text file.
|
private |
helper class. which file name belongs to which experimental setting
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private |
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private |
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private |
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private |
Not implemented.
| OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:27 using doxygen 1.8.5 |