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| | ~SHFeature () |
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| | SHFeature (const SHFeature &) |
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| | SHFeature (const SHFeature *) |
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| | SHFeature (double, double, int, int, int, int, float, float, float) |
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| | SHFeature (float, int, int) |
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| | SHFeature (MS2Feature *) |
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| | SHFeature () |
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| SHFeature & | operator= (const SHFeature &) |
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| void | show_info () |
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| void | showMS2consensSpectraInfo () |
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| bool | operator== (const SHFeature &) |
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| void | add_MS2_info (MS2Info *) |
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| void | add_MS2_info (std::map< double, std::vector< MS2Info > > *) |
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| bool | get_MS2_info () |
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| bool | get_MS2_info (double) |
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| bool | check_MS2_empty () |
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| void | removeAllMS2Information () |
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| int | get_MS2_SCANS_SIZE () |
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std::map< double, std::vector
< MS2Info > > * | get_MS2_SCAN_MAP () |
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std::map< double, std::vector
< MS2Info > >::iterator | get_MS2_SCANS_START () |
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std::map< double, std::vector
< MS2Info > >::iterator | get_MS2_SCANS_END () |
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| MS2Info * | get_best_MS2_SCAN () |
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| MS2Info * | get_best_MS2_SCAN (double) |
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| void | setFeatureExtraInformation (std::string in) |
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| std::string | getFeatureExtraInformation () |
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| void | add_matched_feature (SHFeature *) |
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| std::map< int, SHFeature > * | get_match_list_REFERENCE () |
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| std::map< int, SHFeature > | get_match_list () |
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std::map< int, SHFeature >
::iterator | get_match_list_start () |
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std::map< int, SHFeature >
::iterator | get_match_list_end () |
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std::map< int, SHFeature >
::iterator | find_match_by_id (int ID) |
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| SHFeature * | get_feature (int) |
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| double | get_MATCHED_peak_area () |
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| bool | check_match_by_id (int) |
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| void | erase_match_list () |
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| std::map< int, double > | get_feature_profile () |
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| int | get_replicate_match_nb () |
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| int | get_matching_nb () |
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| double | get_replicate_intensity_sum () |
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| double | get_MZ () |
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| void | set_MZ (double in) |
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| double | get_MZ_START () |
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| void | set_MZ_START (double IN) |
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| double | get_MZ_END () |
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| void | set_MZ_END (double IN) |
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| double | get_THEO_MZ () |
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| double | get_THEO_MZ (double T) |
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| std::string | get_AC () |
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| std::string | get_AC (double T) |
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| bool | check_AC (std::string IN) |
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| bool | check_AC (std::string IN, double T) |
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| std::string | get_SQ () |
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| std::string | get_SQ (double T) |
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| std::string | get_TOTAL_SQ () |
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| std::string | get_TOTAL_SQ (double T) |
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| std::string | get_MOD_SQ () |
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| std::string | get_MOD_SQ (double T) |
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| double | get_pep_prob () |
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| double | get_pep_prob (double T) |
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| std::string | get_MS2_TYPE_TAG () |
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| std::string | get_MS2_TYPE_TAG (double T) |
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| int | get_MS2_scan () |
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| int | get_MS2_scan (double T) |
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std::map< double, std::vector
< MS2Info > > * | get_MS2_SCAN_LIST () |
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std::map< double, std::vector
< MS2Info > >::iterator | get_MS2_SCAN_LIST_START () |
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std::map< double, std::vector
< MS2Info > >::iterator | get_MS2_SCAN_LIST_END () |
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| int | get_scan_number () |
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| void | set_scan_number (int IN) |
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| int | get_scan_start () |
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| void | set_scan_start (int IN) |
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| int | get_scan_end () |
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| void | set_scan_end (int IN) |
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| int | get_charge_state () |
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| void | set_charge_state (int IN) |
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| void | set_peak_area (float IN) |
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| double | get_peak_area () |
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| double | get_peak_area (int) |
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| double | get_apex_peak_intensity () |
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| void | set_apex_peak_intensity (double in) |
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| void | normalize_peak_area_by_factor (double factor) |
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| double | get_alignment_error_up () |
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| void | set_alignment_error_up (double IN) |
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| double | get_alignment_error_down () |
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| void | set_alignment_error_down (double IN) |
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| void | set_SCORE_HOLDER (double IN) |
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| double | get_SCORE_HOLDER () |
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| double | get_retention_time () |
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| void | set_retention_time (double IN) |
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| double | get_retention_time_START () |
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| void | set_retention_time_START (double IN) |
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| double | get_retention_time_END () |
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| void | set_retention_time_END (double IN) |
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| double | get_raw_retention_time_apex () |
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| void | set_raw_retention_time_apex (double IN) |
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| double | get_raw_MZ () |
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| void | set_raw_MZ (double IN) |
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| void | set_feature_ID (int IN) |
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| int | get_feature_ID () |
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| void | set_spectrum_ID (int IN) |
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| int | get_spectrum_ID () |
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| void | set_MASTER_ID (int IN) |
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| int | get_MASTER_ID () |
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| int | get_nb_common_match () |
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| double | get_peak_score () |
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| void | set_peak_score (double in) |
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| double | get_Molecular_Mass () |
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| double | get_FEATURE_PI () |
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| void | set_FEATURE_PI (double IN) |
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| void | deriveChargeStates (SHFeature *) |
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| void | setLCelutionProfile (FeatureLCProfile *IN) |
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| FeatureLCProfile * | getLCelutionProfile () |
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| double | get_profile_retention_time () |
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| double | get_profile_Molecular_Mass () |
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| bool | get_feature_match_status () |
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| void | set_feature_match_status (bool IN) |
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| void | addMS2Feature (MS2Feature *in) |
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| void | removeMS2Feature () |
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| MS2Feature * | getMS2Feature () |
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| double | getSignalToNoise () |
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| void | setSignalToNoise (double in) |
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| double | getBackgroundNoiseLevel () |
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| void | setBackgroundNoiseLevel (double in) |
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