A tool for visualization and validation of PSI mapping and CV files.
This tool is used to validate the correct use of mapping files and CV files.
It can also generate a HTML representation of mapping file and CV.
The command line parameters of this tool are:
CVInspector -- A tool for visualization and validation of PSI mapping and CV files.
Version: 1.11.1 Nov 14 2013, 11:18:15, Revision: 11976
Usage:
CVInspector <options>
Options (mandatory options marked with '*'):
-cv_files <files>* List of ontology files in OBO format. (valid formats: 'obo')
-cv_names <names>* List of identifiers (one for each ontology file).
-mapping_file <file> Mapping file in CVMapping (XML) format. (valid formats: 'XML')
-ignore_cv <list> A list of CV identifiers which should be ignored. (default: '[UO PATO BTO]')
-html <file> Writes an HTML version of the mapping file with annotated CV terms (valid formats:
'HTML')
Common UTIL options:
-ini <file> Use the given TOPP INI file
-threads <n> Sets the number of threads allowed to be used by the TOPP tool (default: '1')
-write_ini <file> Writes the default configuration file
--help Shows options
--helphelp Shows all options (including advanced)
INI file documentation of this tool:
| OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:24 using doxygen 1.8.5 |