###
### Sun Jul 4 18:38:00 CEST 2004:
### /usr/pkg/bin/bmake bulk-package for gp-0.26
### Current pkg count:  2 installed packages: digest-20021220 patch-2.5.4nb2
###
BULK> Full rebuild in progress...
BULK> Cleaning package and its depends
===> Cleaning for gp-0.26
===> Cleaning for patch-2.5.4nb2
BULK> Removing installed packages which are not needed to build gp-0.26
BULK> Keeping BULK_PREREQ: digest-20021220 (pkgtools/digest)
BULK> gp-0.26 requires installed package patch-2.5.4nb2 (devel/patch) to build.
BULK> Installing packages which are required to build gp-0.26.
BULK> Required package patch-2.5.4nb2 (devel/patch) is already installed
BULK> Required package digest-20021220 (pkgtools/digest) is already installed
/usr/pkg/bin/bmake package (gp-0.26)
===> Checking for vulnerabilities in gp-0.26
=> gp-0.26.tgz doesn't seem to exist on this system.
=> Attempting to fetch gp-0.26.tgz from ftp://ftp.cz.NetBSD.org/pub/NetBSD/packages/distfiles/.
=> [141159 bytes]
=> Checksum OK for gp-0.26.tgz.
work -> /pkgbuild/biology/gp/work
===> Extracting for gp-0.26
===> Required installed package patch>=2.2: patch-2.5.4nb2 found
===> Patching for gp-0.26
===> Applying pkgsrc patches for gp-0.26
===> Overriding tools for gp-0.26
===> Buildlinking for gp-0.26
===> Configuring for gp-0.26
===> Building for gp-0.26
cd src ; make PROGRAMS="gp_acc gp_cusage gp_digest gp_dimer gp_findorf gp_gc gp_getseq gp_matrix gp_mkmtx gp_pars gp_pattern gp_qs gp_randseq gp_scan gp_seq2prot gp_shift gp_slen gp_tm gp_trimer gp_primer gp_adjust gp_cdndev" GDPROGRAMS="" CC=gcc  LIBS=" -lm" CFLAGS="-pedantic -O3 -Wall -g" ;
gcc -pedantic -O3 -Wall -g   -c genpak.c
Creating gp_acc
gcc -pedantic -O3 -Wall -g -o gp_acc genpak.o gp_acc.c -lm
Creating gp_cusage
gcc -pedantic -O3 -Wall -g -o gp_cusage genpak.o gp_cusage.c -lm
Creating gp_digest
gcc -pedantic -O3 -Wall -g -o gp_digest genpak.o gp_digest.c -lm
"gp_digest.c", line 211: warning: implicit function declaration: Compare
Creating gp_dimer
gcc -pedantic -O3 -Wall -g -o gp_dimer genpak.o gp_dimer.c -lm
"gp_dimer.c", line 109: warning: implicit function declaration: PrintHeader
Creating gp_findorf
gcc -pedantic -O3 -Wall -g -o gp_findorf genpak.o gp_findorf.c -lm
Creating gp_gc
gcc -pedantic -O3 -Wall -g -o gp_gc genpak.o gp_gc.c -lm
"gp_gc.c", line 194: warning: implicit function declaration: strlen
Creating gp_getseq
gcc -pedantic -O3 -Wall -g -o gp_getseq genpak.o gp_getseq.c -lm
"gp_getseq.c", line 80: warning: implicit function declaration: strlen
Creating gp_matrix
gcc -pedantic -O3 -Wall -g -o gp_matrix genpak.o gp_matrix.c -lm
"gp_matrix.c", line 606: warning: implicit function declaration: strcpy
"gp_matrix.c", line 1034: warning: implicit function declaration: strlen
Creating gp_mkmtx
gcc -pedantic -O3 -Wall -g -o gp_mkmtx genpak.o gp_mkmtx.c -lm
Creating gp_pars
gcc -pedantic -O3 -Wall -g -o gp_pars genpak.o gp_pars.c -lm
Creating gp_pattern
gcc -pedantic -O3 -Wall -g -o gp_pattern genpak.o gp_pattern.c -lm
"gp_pattern.c", line 128: warning: implicit function declaration: PrintHead
"gp_pattern.c", line 133: warning: implicit function declaration: GetFreq
"gp_pattern.c", line 134: warning: implicit function declaration: PrintFreq
Creating gp_qs
gcc -pedantic -O3 -Wall -g -o gp_qs genpak.o gp_qs.c -lm
"gp_qs.c", line 121: warning: implicit function declaration: strlen
"gp_qs.c", line 122: warning: implicit function declaration: strcpy
"gp_qs.c", line 218: warning: implicit function declaration: strcat
"gp_qs.c", line 241: warning: implicit function declaration: Compare
Creating gp_randseq
gcc -pedantic -O3 -Wall -g -o gp_randseq genpak.o gp_randseq.c -lm
"gp_randseq.c", line 133: warning: implicit function declaration: strlen
Creating gp_scan
gcc -pedantic -O3 -Wall -g -o gp_scan genpak.o gp_scan.c -lm
"gp_scan.c", line 203: warning: implicit function declaration: strlen
Creating gp_seq2prot
gcc -pedantic -O3 -Wall -g -o gp_seq2prot genpak.o gp_seq2prot.c -lm
Creating gp_shift
gcc -pedantic -O3 -Wall -g -o gp_shift genpak.o gp_shift.c -lm
"gp_shift.c", line 118: warning: implicit function declaration: shift_positions
Creating gp_slen
gcc -pedantic -O3 -Wall -g -o gp_slen genpak.o gp_slen.c -lm
Creating gp_tm
gcc -pedantic -O3 -Wall -g -o gp_tm genpak.o gp_tm.c -lm
Creating gp_trimer
gcc -pedantic -O3 -Wall -g -o gp_trimer genpak.o gp_trimer.c -lm
"gp_trimer.c", line 101: warning: implicit function declaration: PrintHeader
Creating gp_primer
gcc -pedantic -O3 -Wall -g -o gp_primer genpak.o gp_primer.c -lm
"gp_primer.c", line 215: warning: implicit function declaration: Compare
"gp_primer.c", line 233: warning: implicit function declaration: dimer_print
"gp_primer.c", line 314: warning: implicit function declaration: stem_print
Creating gp_adjust
gcc -pedantic -O3 -Wall -g -o gp_adjust genpak.o gp_adjust.c -lm
Creating gp_cdndev
gcc -pedantic -O3 -Wall -g -o gp_cdndev genpak.o gp_cdndev.c -lm
-e 
All programs compiled. 
Type 'make install' to install all programs.
=> Fixing buildlink references in files-to-be-installed.
===> Installing for gp-0.26
cd src ; make PROGRAMS="gp_acc gp_cusage gp_digest gp_dimer gp_findorf gp_gc gp_getseq gp_matrix gp_mkmtx gp_pars gp_pattern gp_qs gp_randseq gp_scan gp_seq2prot gp_shift gp_slen gp_tm gp_trimer gp_primer gp_adjust gp_cdndev" GDPROGRAMS="" CC=gcc  LIBS=" -lm" CFLAGS="-pedantic -O3 -Wall -g" ;
-e 
All programs compiled. 
Type 'make install' to install all programs.
/bin/sh: test: argument expected
*** Error code 1

Stop.
bmake: stopped in /pkgbuild/biology/gp/work/gp-0.26
*** Error code 1

Stop.
bmake: stopped in /usr/pkgsrc/biology/gp
*** Error code 1

Stop.
bmake: stopped in /usr/pkgsrc/biology/gp
*** Error code 1

Stop.
bmake: stopped in /usr/pkgsrc/biology/gp
*** Error code 1

Stop.
bmake: stopped in /usr/pkgsrc/biology/gp
BULK> gp-0.26 was marked as broken:
-rw-r--r--   1 root     other       5841 Jul  4 18:38 .broken.html
/usr/pkg/bin/bmake deinstall
===> Deinstalling for gp
BULK> Marking all packages which depend upon gp-0.26 as broken:
BULK> Build for gp-0.26 was not successful, aborting.