Fast Nonconvex Deconvolution of Calcium Imaging Data

Documentation for package ‘FastLZeroSpikeInference’ version 2018.12.10

FastLZeroSpikeInference-package	FastLZeroSpikeInference: FastLZeroSpikeInference: A package for estimating spike times from calcium imaging data using an L0 penalty
estimate_calcium	Estimate underlying calcium concentration based on estimated spikes
estimate_spikes	Estimate spike train, underlying calcium concentration, and changepoints based on a fluorescence trace.
estimate_spike_paths	Estimate spike train, underlying calcium concentration, and changepoints based on a fluorescence trace. Automatic tuning parameter selection within a range of values [lambda_min, lambda_max]
FastLZeroSpikeInference	FastLZeroSpikeInference: FastLZeroSpikeInference: A package for estimating spike times from calcium imaging data using an L0 penalty
plot.estimated_spikes	Plot the solution to an L0 segmentation problem
plot.estimated_spike_paths	Plot number of spikes vs. tuning parameter
plot.simdata	Plot simulated data
print.estimated_spikes	Print estimated spikes
print.estimated_spike_paths	Print estimated spike path
print.simdata	Print simulated data
simulate_ar1	Simulate fluorescence trace based on simple AR(1) generative model