| Element | Missed Instructions | Cov. | Missed Branches | Cov. | Missed | Cxty | Missed | Lines | Missed | Methods |
| Total | 352 of 463 | 23% | 41 of 44 | 6% | 23 | 28 | 66 | 94 | 2 | 6 |
| makeMenuItem(ExternalProgram, boolean) | 0% | 0% | 12 | 12 | 30 | 30 | 1 | 1 | ||
| makeOptionsMenuItem(ExternalProgram) | 0% | 0% | 8 | 8 | 26 | 26 | 1 | 1 | ||
| RunMenu(JFrame, Selection, String) | 40% | 16% | 3 | 4 | 10 | 19 | 0 | 1 | ||
| addNCBISearches(Selection) | 100% | 100% | 0 | 2 | 0 | 10 | 0 | 1 | ||
| addPfamSearches(Selection) | 100% | n/a | 0 | 1 | 0 | 7 | 0 | 1 | ||
| RunMenu(JFrame, Selection) | 100% | n/a | 0 | 1 | 0 | 2 | 0 | 1 |