| IndexedGFFDocumentEntry.java |  | 0% |  | 0% | 242 | 244 | 629 | 633 | 61 | 63 | 4 | 5 |
| ValidateFeature.java |   | 32% |   | 25% | 178 | 240 | 333 | 488 | 22 | 50 | 0 | 11 |
| ChadoCanonicalGene.java |   | 29% |   | 24% | 137 | 185 | 376 | 522 | 27 | 51 | 1 | 2 |
| GFFStreamFeature.java |   | 55% |   | 37% | 165 | 234 | 273 | 589 | 27 | 61 | 0 | 9 |
| GFFDocumentEntry.java |   | 46% |   | 47% | 91 | 139 | 245 | 473 | 9 | 18 | 0 | 1 |
| ReadAndWriteEntry.java |  | 0% |  | 0% | 88 | 88 | 209 | 209 | 13 | 13 | 2 | 2 |
| DatabaseInferredFeature.java |  | 0% |  | 0% | 62 | 62 | 189 | 189 | 13 | 13 | 1 | 1 |
| BioJavaFeature.java |  | 0% |  | 0% | 56 | 56 | 176 | 176 | 25 | 25 | 1 | 1 |
| SimpleDocumentEntry.java |   | 61% |   | 54% | 91 | 160 | 132 | 385 | 12 | 45 | 1 | 2 |
| PublicDBDocumentEntry.java |   | 60% |   | 52% | 83 | 139 | 144 | 368 | 4 | 19 | 0 | 1 |
| MSPcrunchStreamFeature.java |  | 0% |  | 0% | 28 | 28 | 137 | 137 | 8 | 8 | 1 | 1 |
| IndexFastaStream.java |   | 7% |   | 8% | 45 | 46 | 117 | 126 | 20 | 21 | 0 | 1 |
| Location.java |   | 64% |   | 59% | 67 | 138 | 102 | 326 | 5 | 32 | 0 | 1 |
| BioJavaEntry.java |  | 0% |  | 0% | 42 | 42 | 134 | 134 | 34 | 34 | 1 | 1 |
| LocationParseNode.java |   | 63% |   | 56% | 75 | 136 | 116 | 303 | 6 | 30 | 0 | 1 |
| FuzzyRange.java |   | 7% |   | 5% | 56 | 58 | 97 | 105 | 11 | 13 | 0 | 1 |
| BlastStreamFeature.java |  | 0% |  | 0% | 13 | 13 | 95 | 95 | 7 | 7 | 1 | 1 |
| GffToEMBL.java |   | 21% |   | 10% | 39 | 42 | 93 | 121 | 2 | 5 | 0 | 1 |
| GenbankTblOutputStream.java |  | 0% |  | 0% | 41 | 41 | 95 | 95 | 5 | 5 | 1 | 1 |
| GenbankStreamSequence.java |  | 0% |  | 0% | 31 | 31 | 96 | 96 | 11 | 11 | 1 | 1 |
| UI.java |  | 0% |  | 0% | 27 | 27 | 71 | 71 | 15 | 15 | 2 | 2 |
| PublicDBStreamFeature.java |   | 60% |   | 53% | 33 | 60 | 70 | 217 | 0 | 14 | 0 | 1 |
| SimpleDocumentFeature.java |   | 51% |   | 63% | 24 | 65 | 42 | 136 | 2 | 25 | 0 | 1 |
| SimpleEntryInformation.java |   | 53% |   | 49% | 42 | 76 | 79 | 167 | 6 | 22 | 0 | 1 |
| RawStreamSequence.java |   | 49% |   | 35% | 34 | 51 | 56 | 129 | 6 | 13 | 0 | 1 |
| StreamQualifier.java |   | 61% |   | 62% | 38 | 64 | 49 | 145 | 2 | 10 | 0 | 1 |
| PartialSequence.java |  | 0% |  | 0% | 26 | 26 | 61 | 61 | 18 | 18 | 1 | 1 |
| QualifierLazyLoading.java |  | 0% |  | 0% | 25 | 25 | 52 | 52 | 13 | 13 | 1 | 1 |
| BioJavaSequence.java |  | 0% |  | 0% | 24 | 24 | 62 | 62 | 14 | 14 | 1 | 1 |
| Range.java |   | 37% |   | 27% | 20 | 33 | 35 | 61 | 3 | 13 | 0 | 1 |
| DocumentEntryAutosaveThread.java |  | 6% |  | 0% | 13 | 15 | 43 | 49 | 1 | 3 | 0 | 1 |
| DocumentEntryFactory.java |   | 21% |   | 12% | 25 | 28 | 41 | 55 | 3 | 5 | 0 | 1 |
| DatabaseDocumentEntry.java |  | 0% |  | 0% | 16 | 16 | 33 | 33 | 8 | 8 | 1 | 1 |
| LocationLexer.java |   | 65% |   | 57% | 20 | 42 | 26 | 86 | 1 | 11 | 0 | 2 |
| LineGroup.java |   | 77% |   | 53% | 52 | 87 | 30 | 134 | 1 | 13 | 0 | 1 |
| GFFUtils.java |   | 50% |   | 36% | 17 | 22 | 26 | 56 | 1 | 3 | 0 | 1 |
| ReadOnlyEmblStreamFeature.java |  | 0% |  | 0% | 17 | 17 | 35 | 35 | 9 | 9 | 1 | 1 |
| GFF3AttributeBuilder.java |   | 86% |   | 76% | 16 | 49 | 17 | 107 | 5 | 21 | 0 | 3 |
| FeatureComparator.java |   | 65% |   | 57% | 11 | 24 | 23 | 60 | 0 | 3 | 0 | 1 |
| GenbankStreamFeature.java |  | 0% | | n/a | 6 | 6 | 14 | 14 | 6 | 6 | 1 | 1 |
| KeyVector.java |  | 13% |  | 0% | 6 | 8 | 13 | 17 | 2 | 4 | 0 | 1 |
| BetweenRange.java |  | 0% |  | 0% | 7 | 7 | 12 | 12 | 4 | 4 | 1 | 1 |
| RangeVector.java |  | 15% |  | 0% | 5 | 7 | 11 | 16 | 2 | 4 | 0 | 1 |
| GenbankMisc.java |  | 0% |  | 0% | 5 | 5 | 11 | 11 | 2 | 2 | 1 | 1 |
| MSPcrunchDocumentEntry.java |  | 0% |  | 0% | 8 | 8 | 11 | 11 | 6 | 6 | 1 | 1 |
| BlastDocumentEntry.java |  | 0% |  | 0% | 8 | 8 | 11 | 11 | 6 | 6 | 1 | 1 |
| StreamSequenceFactory.java |   | 50% |   | 37% | 8 | 12 | 10 | 21 | 1 | 3 | 0 | 1 |
| EmblStreamSequence.java |   | 91% |   | 75% | 11 | 31 | 10 | 105 | 2 | 11 | 0 | 1 |
| EmblStreamFeature.java |   | 48% | | n/a | 1 | 6 | 6 | 14 | 1 | 6 | 0 | 1 |
| Packing.java |   | 73% |   | 50% | 7 | 12 | 10 | 19 | 3 | 5 | 0 | 1 |
| ReadOnlyEntry.java |  | 0% | | n/a | 10 | 10 | 10 | 10 | 10 | 10 | 1 | 1 |
| LocationParseException.java |  | 0% | | n/a | 2 | 2 | 4 | 4 | 2 | 2 | 1 | 1 |
| QualifierInfoHash.java |   | 57% |  | 0% | 4 | 8 | 6 | 17 | 2 | 6 | 0 | 1 |
| GFFEntryInformation.java |   | 88% |  | 100% | 0 | 11 | 8 | 72 | 0 | 3 | 0 | 1 |
| UIEraserThread.java |  | 0% | | 0% | 4 | 4 | 13 | 13 | 3 | 3 | 1 | 1 |
| QualifierInfo.java |   | 85% |  | 86% | 5 | 21 | 6 | 37 | 3 | 10 | 0 | 1 |
| UpperInteger.java |  | 0% | | n/a | 4 | 4 | 8 | 8 | 4 | 4 | 1 | 1 |
| GenbankDocumentEntry.java |  | 0% | | n/a | 4 | 4 | 8 | 8 | 4 | 4 | 1 | 1 |
| LowerInteger.java |  | 0% | | n/a | 4 | 4 | 8 | 8 | 4 | 4 | 1 | 1 |
| FeatureTree.java |   | 90% |  | 87% | 17 | 40 | 16 | 73 | 15 | 32 | 0 | 3 |
| ReadFormatException.java |  | 0% | | n/a | 4 | 4 | 9 | 9 | 4 | 4 | 1 | 1 |
| QualifierInfoVector.java | | 50% | | n/a | 3 | 7 | 7 | 14 | 3 | 7 | 0 | 1 |
| EmblDocumentEntry.java |  | 54% | | 50% | 5 | 7 | 5 | 13 | 2 | 4 | 0 | 1 |
| FeatureTable.java |  | 89% |   | 77% | 6 | 22 | 6 | 60 | 1 | 11 | 0 | 1 |
| FastaStreamSequence.java |  | 67% | | 50% | 5 | 9 | 6 | 17 | 4 | 8 | 0 | 1 |
| DatabaseStreamFeature.java | | 0% | | n/a | 3 | 3 | 6 | 6 | 3 | 3 | 1 | 1 |
| StreamFeatureTable.java | | 54% | | 50% | 2 | 5 | 7 | 17 | 1 | 3 | 0 | 1 |
| QualifierVector.java |  | 88% |  | 81% | 3 | 16 | 4 | 35 | 1 | 8 | 0 | 1 |
| InvalidRelationException.java | | 50% | | n/a | 2 | 4 | 5 | 10 | 2 | 4 | 0 | 1 |
| Key.java |  | 79% | | 75% | 3 | 11 | 3 | 17 | 2 | 9 | 0 | 1 |
| StreamSequence.java |  | 98% |   | 88% | 7 | 54 | 5 | 157 | 0 | 21 | 0 | 1 |
| InvalidQualifierException.java | | 0% | | n/a | 2 | 2 | 4 | 4 | 2 | 2 | 1 | 1 |
| InvalidKeyException.java | | 0% | | n/a | 2 | 2 | 4 | 4 | 2 | 2 | 1 | 1 |
| MiscLineGroup.java |  | 74% | | n/a | 2 | 6 | 4 | 12 | 2 | 6 | 0 | 1 |
| Qualifier.java |  | 94% |  | 87% | 3 | 19 | 3 | 39 | 1 | 11 | 0 | 1 |
| QualifierInfoException.java | | 0% | | n/a | 1 | 1 | 2 | 2 | 1 | 1 | 1 | 1 |
| QualifierParseException.java | | 0% | | n/a | 1 | 1 | 2 | 2 | 1 | 1 | 1 | 1 |
| ReadEvent.java | | 70% | | n/a | 1 | 2 | 1 | 4 | 1 | 2 | 0 | 1 |
| EntryStreamEvent.java | | 0% | | n/a | 1 | 1 | 2 | 2 | 1 | 1 | 1 | 1 |
| OutOfDateException.java | | 0% | | n/a | 1 | 1 | 2 | 2 | 1 | 1 | 1 | 1 |
| BlastEntryInformation.java | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| MSPcrunchEntryInformation.java | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| FeatureHeader.java |  | 97% |  | 83% | 1 | 5 | 1 | 14 | 0 | 2 | 0 | 1 |
| GFF3Encoder.java |  | 100% | | n/a | 0 | 4 | 0 | 5 | 0 | 4 | 0 | 1 |
| EMBLObject.java | | 100% | | n/a | 0 | 3 | 0 | 5 | 0 | 3 | 0 | 1 |
| LocationParseNodeVector.java | | 100% | | n/a | 0 | 2 | 0 | 3 | 0 | 2 | 0 | 1 |
| FeatureVector.java | | 100% | | n/a | 0 | 2 | 0 | 3 | 0 | 2 | 0 | 1 |
| EmblMisc.java | | 100% | | n/a | 0 | 2 | 0 | 4 | 0 | 2 | 0 | 1 |
| GFFMisc.java | | 100% | | n/a | 0 | 1 | 0 | 2 | 0 | 1 | 0 | 1 |
| EntryInformationException.java | | 100% | | n/a | 0 | 1 | 0 | 2 | 0 | 1 | 0 | 1 |